[Biopython] expat and biopython 1.58 problem on linux x64

Jaime Tovar jmtc21 at bath.ac.uk
Thu Oct 27 20:33:18 UTC 2011


Hello all,

I'm having troubles while updating my biopython to 1.58.

I'm having exactly the same problem with the xml parser as described in 
this old post:

http://www.biopython.org/pipermail/biopython/2011-May/007263.html

Sadly I may have to use the entrez module so it will make me happy to 
have the thing running if possible.

I'm installing in a opensuse 11.3 x64 box
Did a rpm install of biopython from the opensuse science repo. So I have 
1.58-1.2 installed.
Python 1.6.5-3.5.1 for x64
expat 2.0.1-98.1 x64

Tried to install both by hand from the tar.gz and using an rpm but the 
problem persists.

Any help will be greatly appreciated.

Thanks!!!

Jaime.




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