[Biopython] VCF parser

[Andreas Wilm]

HI Tiago,

I'm not aware of a Biopython VCF parser, but pysam seems to have one
(haven't used it though). Try
>>> from pysam import cvcf

You also might want to check an implementation which was posted on
seqanswers: http://seqanswers.com/forums/archive/index.php/t-9266.html

Andreas

PS:
For the sake of completeness: your question was asked before here (no
replies). See http://www.biopython.org/pipermail/biopython/2011-March/007131.html


2011/10/4 Tiago Antão <tiagoantao at gmail.com>:
> Hi,
>
> I wonder if there is a VCF parser in either Python or Java? Either I
> am being dumb at searching (probably) or nothing exists?
>
> Thanks,
> Tiago
>
> --
> "If you want to get laid, go to college.  If you want an education, go
> to the library." - Frank Zappa
>
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-- 
Andreas Wilm
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