[Biopython] pdb file question

João Rodrigues anaryin at gmail.com
Mon Oct 17 14:08:54 UTC 2011


Hello Jessica,

Are you extracting the symmetry information with Biopython? If so, how are
you using it to generate the other symmetry "members"? Using atom.transform?

Cheers,

João [...] Rodrigues
http://nmr.chem.uu.nl/~joao



2011/10/17 Jessica Grant <jgrant at smith.edu>

> Hello,
>
> I am trying to write a script that reproduces the crystal structure of a
> protein based on the information in the pdb file.  I have gotten kind of
> stuck using the SMTRY lines in remark 290.  It doesn't seem to contain all
> the information I need, at least the results I am getting don't look the
> same as when I produce symmetry mates in pymol, for example.  Has anyone any
> experience with this?  Thanks,
>
> Jessica
>
>
>
> ______________________________**_________________
> Biopython mailing list  -  Biopython at lists.open-bio.org
> http://lists.open-bio.org/**mailman/listinfo/biopython<http://lists.open-bio.org/mailman/listinfo/biopython>
>




More information about the Biopython mailing list