[Biopython] installation failure on mac OS10.6.7

Peter Cock p.j.a.cock at googlemail.com
Mon Jun 6 16:38:01 UTC 2011


On Mon, Jun 6, 2011 at 5:18 PM, Dilara Ally <dilara.ally at gmail.com> wrote:
> Hi,
>
> I was trying to install Biopython on mac OS 10.6.7.  I checked the archives
> and installed Apple's Xcode ver4.0.2.  But I got this error message:
>
>
> building 'Bio.cpairwise2' extension
> gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -arch ppc -arch i386 -g
> -O2 -DNDEBUG -g -O3 -IBio
> -I/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c
> Bio/cpairwise2module.c -o
> build/temp.macosx-10.3-fat-2.6/Bio/cpairwise2module.o
> unable to execute gcc-4.0: No such file or directory
> error: command 'gcc-4.0' failed with exit status 1
>
> Thanks so much for the help.
>
> Cheers, Dilara

That's strange - I have it under /usr/bin/gcc-4.0

When you installed X Code, did you tick the optional 10.4 SDK as recommended
here http://biopython.org/wiki/Download ?


Peter




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