[Biopython] missing dtd in Bio.Entrez

Peter Cock p.j.a.cock at googlemail.com
Wed Jun 1 08:42:47 UTC 2011


On Wed, Jun 1, 2011 at 9:33 AM, Guy Eakin <guyeakin at gmail.com> wrote:
> Well, I suppose that explains it.  version 1.54 is what I am using.  I
> downloaded it from the Ubuntu software center earlier tonight. I had
> just assumed that was most recent. Sorry for the red herring.
>
> guy

Yes, that makes sense.

If you want a more recent version, uou can probably ask for the latest
version to be offered on an Ubuntu backport repository - otherwise natty
has Biopython 1.56 and oneiric has 1.57 according to this:

http://packages.ubuntu.com/search?suite=all&searchon=names&keywords=python-biopython

Alternatively, try:

sudo apt-get remove python-biopython python-biopython-doc python-biopython-sql
sudo apt-get build-dep python-biopython python-biopython-doc
python-biopython-sql

and then install from source.

Peter




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