[Biopython] Strange Gaps when writing Multi-Fasta

[Peter Cock]

On Thu, Feb 24, 2011 at 5:41 PM, Brett Bowman <bnbowman at gmail.com> wrote:
> I'm trying to write my own script to parse multiple alignments from
> the new standalone PSI-Blast output, but when I try to write the
> results to a file, I get really odd results.

I'd guess you have a new line or carriage return in your string
somehow (\n or \r). Try printing out repr(...) of you string.

Peter