[Biopython] Bio.Emboss.Primer3 -parser and Primer3 2.2.3

Peter biopython at maubp.freeserve.co.uk
Tue Feb 1 16:41:08 UTC 2011


On Tue, Feb 1, 2011 at 4:28 PM, Jukka-Pekka Verta <jp.verta at gmail.com> wrote:
> Hello,
>
> I'm having trouble parsing out the Bio.Emboss.Primer3Commandline ...

Could you file a bug (including version numbers of Biopython, EMBOSS,
etc), with a short bit of Python code showing how you parse the file, and
then (after filing the bug you can) attach the example Primer3 file to it.
http://bugzilla.open-bio.org/enter_bug.cgi?product=Biopython

I could try cut and pasting the example from the email, but white space
and line wrapping tends to make a mess of things.

Could you also clarify what happens with the other reverse primer
attributes, like reverse_tm?

Thanks,

Peter



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