[Biopython] CDS location from xml in Biopython
akooser at unm.edu
Mon Oct 11 16:09:16 EDT 2010
Thank you again for your help. I have my program up and running.
One thing that is throwing me is I am trying to extract the location
of the gene from the BLAST .xml file. I've dug through the .xml and
can't seem to find the information. Do I need to have the CDS files in
order to parse the location start and stop values.
So for instance, the record for
modular polyketide synthase [Streptomyces sp. AA4]
before the sequence data is
/note="COG3321 Polyketide synthase modules and
The start/stop values (25146:40916) aren't in the .xml is that
correct? So I would need to add a separate code in Biopython to handle
the CDS files?
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