[Biopython] Cross_match

Peter biopython at maubp.freeserve.co.uk
Mon May 31 20:54:45 UTC 2010


On Mon, May 31, 2010 at 9:48 PM, Alvaro F Pena Perea wrote:
> Hi all,
> I'm working on small RNA sequences from NGS. In this regard, I
> made an alignment between the sequences and the genome with
> cross match with the tags option. I wonder if there is some method
> in bioperl to parse cross_match alignments.

I think BioPerl's SearchIO supports cross_match, but Biopython
doesn't (yet).

Peter



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