[Biopython] Bio.SeqIO.index() - gzip support and/or index stored on disk?

Renato Alves rjalves at igc.gulbenkian.pt
Mon Jun 7 08:01:25 UTC 2010


Quoting Peter on 06/04/2010 09:42 AM:
> Unfortunately I was inconsistent about which order I used in my email
> (gzip vs on disk indexes) so I'm not sure which you are talking about.
> Are you saying supporting on disk indexes would be your priority (even
> though you did ask look at gzip support in the past)?

Yes exactly. The gzip support became a non priority at least for our
current local uses. On the other hand, disk support would be quite helpful.
As a matter of fact we borrowed a little of your SeqIO.index() sqlite
code you have on a github branch.

Renato.



More information about the Biopython mailing list