[Biopython] Cross_match

Peter biopython at maubp.freeserve.co.uk
Tue Jun 1 12:57:53 UTC 2010


On Tue, Jun 1, 2010 at 1:37 PM, Alvaro F Pena Perea
<alvin at pasteur.edu.uy> wrote:
> Sorry about the mistake, I meant to say Biopython instead bioperl. Well, now
> I know that SearchIO supports cross match in bioperl.
> Anyway, I agree that it would be great if we could make some method for
> cross match in Biopython. In my case I'm more interested in the hit
> information than the pairwise alignment. I'll take a look to the Bio.AlignIO

Just to clarify - Bio.AlignIO does not currently support cross_match,
but if it did this would be focusing on the pairwise alignments.

Peter



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