[Biopython] BioJava-like seqres alignment for Bio.PDB

[Reece Hart]

On 06/30/2010 06:44 AM, Peter wrote:
> That looks like a good reason to have a PDB XML parser (as trying to do
> this from the plain text PDB is probably fiddly).
>    

The only way to do this from the PDB text file is to infer the mapping 
by aligning the seqres block and the ATOM residues. Fiddly is a generous 
description of the problems one will encounter.

mmCIF and XML are the authoritative sources, AFAIK.

-Reece