[Biopython] how to find closest genes for a given location

Sameet Mehta msameet at gmail.com
Thu Feb 25 06:44:01 UTC 2010


Dear all,

I have multiple locations from human genomes.  I want to determine
what are the closest genes on either side of the location, and if it
is in the location how far from the TSS the given location is.  I was
thinking of using the CCDS database, because it contains information
for the genes that have been verified.  Is there any other
better/smarter way of doing it.

all help is appreciated,
Sameet

-- 
Sameet Mehta, Ph.D.,
Research Associate,
Chromatin Biology Laboratory,
National Centre for Cell Science,
NCCS Complex,
University of Pune Campus,
Pune 411007

Phone: +91-20-25708158
Other Email: sameet at nccs.res.in



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