[Biopython] ExPASy.get_sprot_raw giving a FASTA record instead of a Swiss-Prot/UniprotKB record?
ANGEL VILLAHOZ-BALETA
villahozbale at wisc.edu
Thu Nov 12 14:51:11 EST 2009
Hi to all,
I am using Biopython 1.5.1 and it seems that I have met with a strange situation...
When using ExPASy.get_sprot_raw, it gives me a FASTA record instead of a Swiss-Prot/UniProtKB record...
Anyone has met the same situation?
You can test the following example:
from Bio import ExPASy
from Bio import SeqIO
handle = ExPASy.get_sprot_raw("O23729")
seq_record = SeqIO.read(handle, "swiss")
handle.close()
print seq_record.id
print seq_record.name
print seq_record.description
print repr(seq_record.seq)
print "Length %i" % len(seq_record)
print seq_record.annotations["keywords"]
and write me its result...
Thanks very much,
Angel Villahoz-Baleta.
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