[BioPython] Bio.Entez - Help

Rodrigo faccioli rodrigo_faccioli at uol.com.br
Thu Mar 5 04:04:07 UTC 2009


I want to know where I can find examples about Bio.Entez. Specifically, I'm
developing a program which has a protein primary sequence and I need to
search its conserved domain and read it to show for user.

I'm reading this link
http://www.biopython.org/DIST/docs/tutorial/Tutorial.html#htoc64 . However,
I'm not understanding very well. I know that I will work with CDD database.

I made a simple example which is below.

from Bio import Entrez
Entrez.email = "rodrigo.faccioli at gmail.com" # Always tell NCBI who you are
handle = Entrez.esearch(db="cdd",
term="TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN")
record = Entrez.read(handle)
print record["IdList"]

Thanks for any helps.


-- 
Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structure Bioinformatics
http://laips.sel.eesc.usp.br
Phone: 55 (16) 3373-9366 Ext 229
Curriculum Lattes - http://lattes.cnpq.br/1025157978990218



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