[BioPython] KEGG enzyme error

Peter biopython at maubp.freeserve.co.uk
Tue Feb 3 18:14:03 UTC 2009


On Tue, Feb 3, 2009 at 6:00 PM, Ragini Pandey <rapandey at iupui.edu> wrote:
>
> Hi Peter,
>
> The file I am trying to parse is
> ftp://ftp.genome.jp/pub/kegg/ligand/enzyme/enzyme
>
> Thanks
> Ragini

Hi Ragini,

I was able to quickly test my suggested fix on that file, and it seems
to resolve the problem.

I've checked this into CVS, see Bio/KEGG/Enzyme/__init__.py revision
1.12 (which should be visible on the website in an hour or so),
http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/KEGG/Enzyme/__init__.py?cvsroot=biopython

You should be able to edit your Bio/KEGG/Enzyme/__init__.py file by
hand, or you could update it by downloading the new one from CVS.  Ask
for help if you need clearer instructions...

Let us know if you have any other problems with KEGG.

Thanks,

Peter



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