[Biopython] Wanting to teach a class on biopython ..

[William Heath]

Sounds good thanks!
-Tim

On Mon, Aug 31, 2009 at 6:29 AM, Brad Chapman <chapmanb at 50mail.com> wrote:

> Hi Tim;
> I'm not aware of Python code to do BioBricks design, but a couple of
> repositories for synthetic biology code in Python are:
>
> SynBioPython: http://code.google.com/p/synbiopython/
> My Synthetic Biology code: http://bitbucket.org/chapmanb/synbio/
>
> Unfortunately these are more starting points than tutorial ready
> code.
>
> Hope this helps,
> Brad
>
> > I am very interested in common bio python tasks as they relate
> specifically
> > to synthetic biology.  Could you give me some examples of such tasks?
> > -Tim
> >
> > On Tue, Aug 25, 2009 at 10:06 AM, William Heath <wgheath at gmail.com>
> wrote:
> >
> > > This is amazing thanks!
> > > -Tim
> > >
> > >
> > > On Tue, Aug 25, 2009 at 1:58 AM, Kristian Rother <krother at rubor.de>
> wrote:
> > >
> > >>
> > >> Hi William,
> > >>
> > >> I was teaching Python/BioPython in several courses for Biologists. I
> wrote
> > >> some individual lesson plans but they are rather not readable for
> other
> > >> people (see attachment). There is some material on-line, though:
> > >>
> > >> http://www.rubor.de/lehre_en.html
> > >>
> > >> Typically, the lessons consisted of 2h lecture + 1h exercises on
> language
> > >> concepts + 3h exercises on a single, more biological task. The code
> written
> > >> during the latter was reviewed and scored and the students knew about
> that.
> > >> They had a two-week Python crash course before.
> > >>
> > >> Details on request.
> > >>
> > >> Best Regards,
> > >>   Kristian
> > >>
> > >>
> > >> William Heath schrieb:
> > >>
> > >>> Hi All,
> > >>> I am a member of Tech Shop in Mountain View, CA and I want to teach a
> > >>> class
> > >>> on biopython that is specifically tailored toward the goals of
> synthetic
> > >>> biology.  Can anyone help me to come up with lesson plan for such a
> > >>> class?
> > >>>  In particular I want to use bio bricks, and good opensource design
> > >>> programs
> > >>> for biobricks.  Can anyone recommend any?
> > >>>
> > >>> I also want to utilize any/all concepts in this training:
> > >>>
> > >>> http://www.edge.org/documents/archive/edge296.html
> > >>>
> > >>> Please let me know your ideas on such a lesson plan.
> > >>>
> > >>>
> > >>> -Tim
> > >>> _______________________________________________
> > >>> Biopython mailing list  -  Biopython at lists.open-bio.org
> > >>> http://lists.open-bio.org/mailman/listinfo/biopython
> > >>>
> > >>>
> > >>>
> > >>
> > >>
> > >
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>