[BioPython] Parsing the pairwise alignments from the FASTA tool

Peter biopython at maubp.freeserve.co.uk
Mon May 19 16:21:20 UTC 2008


On Fri, May 16, 2008 at 4:32 PM, Chris Fields wrote:
> Peter,
>
> An enhancement request is in place in bugzilla for this, but BioPerl hasn't
> implemented parsing -m10 yet.  As you indicated this shouldn't be too hard
> to implement; just needs someone with the time to code it up.

Thanks for pointing that out Chris, I had assumed this had already
happened without checking bugzilla.  For anyone else interested, this
is BioPerl Bug 2278 - FASTA m10 output support,
http://bugzilla.open-bio.org/show_bug.cgi?id=2278

I'd still like to hear from anyone else using or interested in using
the FASTA output in python...

Peter



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