[BioPython] Genbank writer (code)

Peter biopython at maubp.freeserve.co.uk
Tue Mar 4 10:30:24 UTC 2008


On Tue, Mar 4, 2008 at 9:48 AM, Stefanie Lück <lueck at ipk-gatersleben.de> wrote:
> Hi!
>
>  I wrote a small class, which I use for writing Genbank Files. If someone is interested,
>  I can send it. At the moment it's adjusted for my purpose but you can change it. It's
>  a very simple line by line writing, but it work's. Since I'm beginner, it's would be helpful
>  to get correction from the user.
>
>  Regards
>  Stefanie

Could you add the files to Bug 2294?
http://bugzilla.open-bio.org/show_bug.cgi?id=2294

I did make a start at integrating Howard's code - some of the issues
involve tweaking the parser to record more information in the
SeqRecord.  Then there is the whole issue of mapping other file
formats to GenBank and vice versa, and validating our output in other
tools (e.g. EMBOSS or BioPerl).

Thanks,

Peter




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