[BioPython] error in writting pdb file

Peter biopython at maubp.freeserve.co.uk
Tue Dec 30 18:00:43 UTC 2008


On Tue, Dec 30, 2008 at 5:44 PM, Bala subramanian
<bala.biophysics at gmail.com> wrote:
> Dear Peter,
>
> Actually 1Ce4.pdb is a NMR structure and i just did the renumbering on one
> model extraced from it.

That would explain why you had less residues.

> Now the script work fine after adjusting the quoted space. Thank you very much.

Good.  I'm glad we could solve this so quickly.

> Could you please suggest me some good tutorials for Bio.PDB
>
> Bala

If you haven't already done so, please see
http://biopython.org/wiki/Documentation

First of all there is a whole chapter in the main Biopython Tutorial,
included with the the Biopython source code archives, and also
available online:
http://www.biopython.org/DIST/docs/tutorial/Tutorial.html
http://www.biopython.org/DIST/docs/tutorial/Tutorial.pdf

Then there is also a separate document, which goes into more detail:
http://biopython.org/DIST/docs/cookbook/biopdb_faq.pdf

There are also a few other examples elsewhere online, try Google.

Peter

P.S.
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