[BioPython] [Biopython-dev] Refactoring motif analysis code
Giovanni Marco Dall'Olio
dalloliogm at gmail.com
Mon Dec 1 16:07:08 EST 2008
On Mon, Dec 1, 2008 at 9:53 PM, Bartek Wilczynski
<bartek at rezolwenta.eu.org> wrote:
> On Mon, Nov 24, 2008 at 4:25 PM, Giovanni Marco Dall'Olio
> <dalloliogm at gmail.com> wrote:
>> I would just like to tell you that I have tried the TAMO framework you
>> suggested me, and found it very useful.
> Yes, I remember, but the problem is with the TAMO license. I think
> that the Motif object might be still
> useful since it is free, allows to read motifs from databases like
> JASPAR to scan sequences and/or
> compare them with "your" motifs.
Thanks for all these changes.
I remember that I wrote a mail to TAMO's authors when I was using it.
They seemed to be interested in integrating the code with biopython,
so maybe the license issue could be superated.
It's up to you, whether you want to reimplement all the functions they
have or not.
My blog on bioinformatics (now in English): http://bioinfoblog.it
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