[BioPython] sql create tables script in tutorial

Peter biopython at maubp.freeserve.co.uk
Wed Aug 27 22:27:21 UTC 2008


On Wed, Aug 27, 2008 at 10:54 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
>> hi all, as i am reading through "Basic BioSQL with Biopython"
>> http://biopython.org/DIST/docs/biosql/python_biosql_basic.html
>
> Those are old and haven't been updated.  ...
> Due to an accident of history, the source for python_biosql_basic.html
> and python_biosql_basic.pdf currently lives in BioSQL's SVN repository
> rather than in Biopython's (which has led to them being more
> complicated to update).

I've just updated
http://biopython.org/DIST/docs/biosql/python_biosql_basic.pdf and
python_biosql_basic.html with the latest version from BioSQL's SVN
repository - viewable here if anyone is interested:
http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema/trunk/doc/biopython/

This does now include a link to the wiki page
http://www.biopython.org/wiki/BioSQL but there are still several
things I think need fixing or updating (e.g. using Bio.SeqIO instead
of Bio.GenBank).

Peter



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