[BioPython] Error for installation of mxTextTools on Mac OS X

Y Tu ytu888 at hotmail.com
Fri Sep 28 11:40:09 UTC 2007


I'm a newbie for the Biopython, and want to install it on my Mac OS X computer. I got the similar error messages on command line when install Python2.5, but finally I did that using the python-2.5.1-macosx.dmg. When I tried to install mxTextTools and got the following messages: mxDateTime.c is missing. Where to find the file? Please help me to solve the problem and thank you very much.

LeesComputer:/Users/Python_Bio/egenix-mx-base-3.0.0.macosx-10.3-fat-py2.5_ucs4.prebuilt Lee$ sudo python setup.py build
running build
running mx_autoconf
gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -D_GNU_SOURCE=1 -I/System/Library/Frameworks/Python.framework/Versions/2.3/include/python2.3 -I/usr/local/include -I/System/Library/Frameworks/Python.framework/Versions/2.3/include -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
macros to define: []
macros to undefine: []
running build_ext

building extension "mx.DateTime.mxDateTime.mxDateTime" (required)
building 'mx.DateTime.mxDateTime.mxDateTime' extension
gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -DUSE_FAST_GETCURRENTTIME -Imx/DateTime/mxDateTime -I/System/Library/Frameworks/Python.framework/Versions/2.3/include/python2.3 -I/usr/local/include -I/System/Library/Frameworks/Python.framework/Versions/2.3/include -c mx/DateTime/mxDateTime/mxDateTime.c -o build/temp.darwin-8.10.1-i386-2.3_ucs2/mx-DateTime-mxDateTime-mxDateTime/mx/DateTime/mxDateTime/mxDateTime.o
i686-apple-darwin8-gcc-4.0.1: mx/DateTime/mxDateTime/mxDateTime.c: No such file or directory
i686-apple-darwin8-gcc-4.0.1: no input files
error: command 'gcc' failed with exit status 1

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