[BioPython] Problem with blastx output parsing =~

[Italo Maia]

Well, i have a perfectly fine blastx output that throws an error when parsed
by biopython.
It gives me this output:

Traceback (most recent call last):
 File "<stdin>", line 1, in <module>
 File "/var/lib/python-support/python2.5/Bio/Blast/NCBIStandalone.py", line
624, in parse
   self._scanner.feed(handle, self._consumer)
 File "/var/lib/python-support/python2.5/Bio/Blast/NCBIStandalone.py", line
99, in feed
   self._scan_parameters(uhandle, consumer)
 File "/var/lib/python-support/python2.5/Bio/Blast/NCBIStandalone.py", line
570, in _scan_parameters
   has_re=re.compile(r"[Ll]ength of \s*[Dd]atabase"))
 File "/var/lib/python-support/python2.5/Bio/ParserSupport.py", line 300,
in read_and_call
   raise SyntaxError, errmsg
SyntaxError: Line does not match regex '[Ll]ength of \s*[Dd]atabase':
Number of HSP's gapped: 136690

What could i do??? I'm using ubuntu feisty here.


-- 
"A arrogância é a arma dos fracos."

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Italo Moreira Campelo Maia
Ciência da Computação - UECE
Desenvolvedor WEB
Programador Java, Python

Meu blog ^^ http://eusouolobomal.blogspot.com/

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