[BioPython] Blast to genome specific databases?

Emanuel Hey jodyhey at yahoo.com
Mon Aug 20 17:48:36 UTC 2007


NCBI has a blast form for genome specific datbases
that returns more information than does a blast to the
generic nucleotide database

http://www.ncbi.nlm.nih.gov/BLAST/

See e.g. for the human genome

http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=9606


I've used NCBIWWW.qblast and used biopython for stand
alone blasting,  but otherwise am not that experience.


Is there a way to script a search that generates the
same results as provided by these newere genome
specific interfaces?

Thanks

Jhey



       
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