[BioPython] Need help parsing Blastoutput

[Michiel De Hoon]

Could you send us the script you were using?

--Michiel.

Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032



-----Original Message-----
From: biopython-bounces at lists.open-bio.org on behalf of Halima Rabiu
Sent: Thu 4/13/2006 11:07 AM
To: biopython at lists.open-bio.org
Subject: [BioPython] Need help parsing Blastoutput
 
Hi All,
I have a BLAST output from a local blast
I need to calculate my % alignment coverage as regard to my subject
I try parsed the blast output and wanted to print the
sbjct Start and Sbjct end. but I could not is there anyway I could this 
try to get mach coverage between my querry and subject I dont need 
Identities,but total % alignment for querry or subject.
Thanks
Halimah

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