[BioPython] Re: [Biopython-dev] [Bug 1761] New: BLAST not returning final results

[Eirik Sønneland]

Kate,

I belive it should be NCBIWWW.qblast(..........

regards
Eirik

bugzilla-daemon at portal.open-bio.org wrote:

>http://bugzilla.open-bio.org/show_bug.cgi?id=1761
>
>           Summary: BLAST not returning final results
>           Product: Biopython
>           Version: Not Applicable
>          Platform: PC
>        OS/Version: Windows XP
>            Status: NEW
>          Severity: normal
>          Priority: P2
>         Component: Other
>        AssignedTo: biopython-dev at biopython.org
>        ReportedBy: genesniffer at hotmail.com
>
>
>Hi,
>I'm just trying to run BLAST at NCBI using NCBIWWW using the script below.  
>The request seems to be sent fine, but the returned page ends with "This page 
>will automatically be updated...."  ie the final results are not being 
>returned.  The module doesn't not seem to be polling for the final result.  Is 
>this a bug in the program or am I doing something wrong?  I look forward to 
>hearing from you...
>Kate
>
>from Bio.Blast import NCBIWWW
>blast_results = NCBIWWW.blast('blastp', 'nr', protein_seq, entrez_query="Homo 
>sapiens [ORGN]")
>blast_results = blast_results.readlines()
>print blast_results
>
>
>
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