[BioPython] non root having problem to install biopython 1.40

[Michiel Jan Laurens de Hoon]

WONG Hua wrote:
> NUMPY_EXTENSIONS = [
>     Extension('Bio.Cluster.cluster',
>               ['Bio/Cluster/clustermodule.c',
>                'Bio/Cluster/cluster.c',
>                'Bio/Cluster/ranlib.c',
>                'Bio/Cluster/com.c',
>                'Bio/Cluster/linpack.c'],
>               include_dirs=["Bio/Cluster","users/invites/wong/module/include/python2.3/Numeric"]
>               ),
> 
> And the error:
> 
> Bio/Cluster/clustermodule.c:2:33: Numeric/arrayobject.h: No such file or directory
> 

clustermodule.c tries to import Numeric/arrayobject.h, not 
arrayobject.h. So you should remove the Numeric in 
users/invites/wong/module/include/python2.3/Numeric, otherwise you'll 
end up with one Numeric too many.

--Michiel.