[BioPython] writing down a string in fasta format

Jonathan Taylor jonathan.taylor at utoronto.ca
Thu Feb 10 11:04:21 EST 2005


I believe you need to use Bio.SeqRecord as the input.  There really 
should be some docstrings in Bio.SeqIO.FASTA.FastaWriter though.

Cheers.
Jon.

Edoardo Saccenti wrote:
> Dear all,
> I'hava a string of length L>>60 and I want write it down in Fasta format
> I try to use FASTA.FastaWriter from BioSeq.IO but it does accept accept a 
> string as input.
> 
> Any Idea??
> 
> thanks
> Edoardo
> --  
> "Raffiniert ist der Herr Gott,
>  aber boshaft ist Er nicht."
> 
> ---
> Dr. Edoardo Saccenti
> FiorGen Pharmacogenomics Foundation
> CERM Nuclear Magnetic Resonace Research Center
> Scientific Pole - University of Florence
> Via Luigi Sacconi n° 6
> 50019 Sesto Fiorentino (FI)
> tel: +39 055 4574193
> fax: +39 055 4574253
> saccenti at cerm.unifi.it
> www.cerm.unifi.it
> 
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