[BioPython] Bug in GenBank module - record.feature method ?

Alexander Morgan amorgan at mitre.org
Sat Dec 24 15:16:01 EST 2005


If you're not tied to the GenBank format, you might have greater ease
getting the GO codes associated with EntrezGene identifiers.

ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/

The gene2go file contains the GO code assignments, and the gene2accession
the mappings to other accession numbers; there is also a gene2refseq file.

They are all in an easy to parse tab delimited format, and you can zip
through them pretty fast and load what you need into a hash, a shelf file or
a DB.


On 12/24/05 9:49 AM, "Srinivas Iyyer" <srini_iyyer_bio at yahoo.com> wrote:
> 
> 2. If there any other way to parse GO annotations for
> all RefSeq sequences in GenBank format.
> 



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