[BioPython] contig mapping in BioPython

[Andrew Nunberg]

There is something similar in Bio.Sequencing
Have you checked out Biopython from CVS?


On a totally different note:
I agree that as a simple user of biopython that the documentation can be
confusing because python does not use special characters to denote basic
data types(variables,lists, dictionary
And I recollect that in other places the object to pass or what is returned
is not documented either(ie you pass a Seq object and get a SeqFeature
object in return...

If I ever get any time, or if I get so fed up to make the time, I will go
through some of the libraries I use most often and try to create more
documentation

Andy

> I'm thinking about writing some BioPython modules for contig/genome mapping
> - something akin to BioPerl's Bio::Assembler::contig - for use in genome
> mapping (and whatever else it ends up lending itself to).
> 
> Can't find any references to any such projects that are ongoing but would
> like to check if anyone else is working on this before I put in too much
> time in reinventing more wheels than we need.
> Anyone think this would/would not be useful?
> 
> Thanks for your input...
> 
> ========================
>          Alan Wardroper
> ========================
> 
> 
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-- 
Andrew Nunberg
Bioinformagician
Orion Genomics
(314)-615-6989
www.oriongenomics.com