[BioPython] embl

[Leighton Pritchard]

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Antonio Cavallo wrote:

| Hi,
| I'm new (and quite confused) to biopython.
| I have a simple question (maybe it looks silly):
| how do I parse an embl data file using biopython?
| Is there any way to retrieve the sequence information (The CDS section)?
| What about the position of the CDS sections (they are split in sub pieces)?

Not that silly a question.  I had a similar problem when I was working with
.tab files (with no header information) from the Sanger, and ended up writing
a BioPython-style parser for them.  It's not the most robust code in the
world, but you're welcome to a copy if it might help you.

- --
Dr Leighton Pritchard AMRSC
D104, PPI, Scottish Crop Research Institute
Invergowrie, Dundee, DD2 5DA, Scotland, UK
E: lpritc at scri.sari.ac.uk	W: http://bioinf.scri.sari.ac.uk/index.shtml
T: +44 (0)1382 568579		F: +44 (0)1382 568578
PGP key FEFC205C: GPG key E58BA41B: http://www.keyserver.net
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