[BioPython] Problem with standalone BLAST

Fabien Crozet f.crozet at free.fr
Tue Jun 1 12:50:59 EDT 2004


What version of BLAST are you using ?
You should update your BLAST version first and try again. The problem could be linked to the compatibility beetween BLAST version and databank release. I have noticed some "little problems" with the 2.2.6 to 2.2.8 version... 
Fabien

>Hi all
>
>I'm having problems with the "NCBIStandalone.blastall".
>After launching the Blast with "doBlast" it runs for a while and then starts
>to sleep. However, it never awakes from this state.
>I'm having this problem on various platforms:
>
>SunOS 5.9
>Python 2.3.3
>BioPython 1.24
>
>And:
>RedHat 7.3
>Python-2.3.4
>Numerical Python 23.1
>mxTextTools 2.0.5
>reportlab 1.19
>Biopython 1.30
>
>
>Can anyone help me?
>
>Thanks in advance.
>Andreas
>
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