[BioPython] clustalw

Ka-Young An kayounga at andrew.cmu.edu
Sat Feb 28 18:05:12 EST 2004


Hi there,

when I loading a clusalw file containg a msa, like following...

%
import Bio.Clustalw
from Bio.Alphabet import IUPAC
from sys import *

align = Bio.Clustalw.parse_file(argv[1], alphabet=IUPAC.protein)

for seq in align.get_all_seqs():
    print seq.description
%

it show an error about 'out of range' in line 5.

Should I change the name for a protein?

Thanks~

-Ky,-




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