[BioPython] yeastgenome

Brad Chapman chapmanb at uga.edu
Tue Feb 10 17:37:15 EST 2004


Hi Jeremy;

> Hi, my name is Jeremy Kolb and I am writing a python library that would
> interact with the yeastgenome.com website. 

Yeastgenome.com doesn't resolve for me, so I'm not exactly sure
which website you are referring to. The sites I do see with yeast
genome data are the Stanford and MIPS sites:

http://genome-www.stanford.edu/Saccharomyces/
http://mips.gsf.de/genre/proj/yeast/index.jsp

Not being a yeast person I'm not sure which site is most often used,
but both definitely seem like good resources. Either way, we
definitely welcome functionality to interact with on-line
information like these.

> When completed it will allow
> you to search for data related to yeast genes and manipulate this data
> using python.  I was wondering if this project would be a candidate for
> inclusion into biopython when completed.

Definitely. Re-usable code interacting with online databases is
always welcome in Biopython. If you are looking at including, please
do make sure you've checked out the documentation about
contributing:

http://www.biopython.org/docs/developer/contrib.html

Thanks for bringing it up and good luck with the coding!
Brad


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