[BioPython] parsing error in Bio.Sequencing.Ace

[Frank Kauff]

Hi Hyung-Yong Kim,


On Mon, 2004-04-12 at 03:34, Hyung-Yong Kim wrote:

...

> This problem seems that because parser don't clarify the distinction between 'CT' record and nucleic acid '^CT'.
> Temporary solution is to modify 362 line of Ace.py
> 
> if line.startswith('CT'):    --> if line.startswith('CT{'):
> 
> It needs to be modified.
> 

It does! In theory, the parser should not run into this problem - are
you using the newest ace.py from cvs? The ace parser has been updated
after the recent 'official' release of biopython. Anyway, please send me
your input file so I can have a closer look why this happens and I can
fix it.

Frank


> Hyung-Yong Kim
> ---------------------------------
> National Livestock Research Institute (Korea)
> Division of Animal Genomics & Bioinformatics
> http://bioinfo.sarang.net
> 
> 
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-- 
Frank Kauff
Dept. of Biology
Duke University
Box 90338
Durham, NC 27708
USA

Phone 919-660-7382
Fax 919-660-7293