[BioPython] GenBank records again

Peter Bienstman Peter.Bienstman at rug.ac.be
Thu Feb 27 16:55:48 EST 2003


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On Thursday 27 February 2003 14:55, JINLING HUANG wrote:
> Hi, all,
>
> Thanks a lot for your suggestions.  I updated my biopython to the CVS
> version, but still had the same problem.
>
> I have attached a small input file for the test.  The problem occurs at
> the 10th entry.
>
> Thanks again and best wishes,
>
> Jinling

The problem is with locus tags containing dashes, like

LOCUS       dj-1beta                 187 aa            linear   INV 
13-NOV-2002

Jeff (or someone else with CVS write access), could you please check in the 
following patch?

RCS file: /home/repository/biopython/biopython/Bio/GenBank/genbank_format.py,v
retrieving revision 1.26
diff -r1.26 genbank_format.py
99c99
<                      Martel.Re("[\w]+"))
- ---
>                      Martel.Re("[\w\-]+"))


Kind regards,

Peter
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