[BioPython] aligning with clustalw fails

Gregory Singer singerg at tcd.ie
Fri Dec 12 12:48:26 EST 2003


I replied to Karin personally about this, but I suppose I should have sent my
message to the whole list. In any case, the problem can easily be fixed:

Update the regex in line 31 of Bio/Clustalw/clustal_format.py to:

Martel.Re("[-a-zA-Z:;^_'\",\#\|\[\]\(\)\/\.\d\+]+"))

 - Greg

Quoting Iddo Friedberg <idoerg at burnham.org>:

> Karin,
> 
> When I removed the "+" character on the first anoatation line, 
> everything seemed to work fine. The "+" sign must be confusing Martel in 
> some way. Needs to be fixed. Good catch, thanks!!
> 
> Iddo
> 


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