[BioPython] Doh.

[Rich Grenyer]

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Hi - I know this happens all the time, but the CVS version of Biopython 
is failing to compile on my very standard RH linux box (RH8.0 full 
install, glibc 2.2.93, gcc v.3.2 20020903 (Red Hat Linux 8.0 3.2-7) 
with the following errors - I'd love to be able to fix this as I need 
the CVS version of GenBank to work :(



building 'Bio.KDTree._KDTreecmodule' extension
gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
-I/usr/include/python2.2 -c
Bio/KDTree/_KDTree.C -o build/temp.linux-i686-2.2/_KDTree.o
Bio/KDTree/_KDTree.C:277: default argument given for parameter 2 of `int
    Region::test_intersection(Region*, float = 0)'
Bio/KDTree/_KDTree.h:71: after previous specification in `int
    Region::test_intersection(Region*, float = 0)'
Bio/KDTree/_KDTree.C: In member function `void
    KDTree::neighbor_simple_search(float)':
Bio/KDTree/_KDTree.C:912: warning: comparison between signed and
unsigned
    integer expressions
Bio/KDTree/_KDTree.C:921: warning: comparison between signed and
unsigned
    integer expressions
error: command 'gcc' failed with exit status 1






Rich Grenyer
Mammalian Evolution and Conservation
Department of Biological Sciences
Imperial College at Silwood Park
Ascot
Berkshire
SL5 7PY
UK

Tel:  +44 (0)20 7594 2249
Fax: +44 (0)20 7594 2339

email: r.grenyer@ic.ac.uk
http://www.bio.ic.ac.uk/evolve/people/rich
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Hi - I know this happens all the time, but the CVS version of
Biopython is failing to compile on my very standard RH linux box
(RH8.0 full install, glibc 2.2.93, gcc v.3.2 20020903 (Red Hat Linux
8.0 3.2-7) with the following errors - I'd love to be able to fix this
as I need the CVS version of GenBank to work :(




building 'Bio.KDTree._KDTreecmodule' extension

gcc -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC

-I/usr/include/python2.2 -c

Bio/KDTree/_KDTree.C -o build/temp.linux-i686-2.2/_KDTree.o

Bio/KDTree/_KDTree.C:277: default argument given for parameter 2 of
`int

   Region::test_intersection(Region*, float = 0)'

Bio/KDTree/_KDTree.h:71: after previous specification in `int

   Region::test_intersection(Region*, float = 0)'

Bio/KDTree/_KDTree.C: In member function `void

   KDTree::neighbor_simple_search(float)':

Bio/KDTree/_KDTree.C:912: warning: comparison between signed and

unsigned

   integer expressions

Bio/KDTree/_KDTree.C:921: warning: comparison between signed and

unsigned

   integer expressions

error: command 'gcc' failed with exit status 1







<fontfamily><param>Helvetica</param>Rich Grenyer

Mammalian Evolution and Conservation

Department of Biological Sciences

Imperial College at Silwood Park

Ascot

Berkshire

SL5 7PY

UK


Tel:  +44 (0)20 7594 2249

Fax: +44 (0)20 7594 2339


email: r.grenyer@ic.ac.uk

http://www.bio.ic.ac.uk/evolve/people/rich</fontfamily>
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