[BioPython] Plotting with Python

[Sagar S. Damle]

Hi Michiel,
  I'm in a similar line of work (numerical analysis of microarray data),
and have had the same frustrations with python.  the Blt package of
Pmw (python mega-widgets) plots line vectors and scatter plots nicely.
With python threading, you can get the interactivity you desire.  And,
though I haven't tested this myself, I think getting it to work in 
windows is not a problem (but it works fine for me in Xwindows).
  hope it helps.  Let me know if you find something better!

Thanks,
Sagar Damle