[BioPython] SwissProt

Cayte katel@worldpath.net
Sun, 19 Mar 2000 22:59:43 -0800 

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  So far, my tests have shown these mismatches.  I don't understand the =
third.  Is there a non-printing character in the text?  The file is =
o59832.sp. I've already posted it to =
ftp://bio.perl.org/pub/katel/SwissProt/

C:\BIOPYT~1\UnitTests\UnitTestCase.py assert_equals 72
SwissProtTestCase.py test_organelle 111
expected is ['Tight junction', 'Transmembrane.'] actual is =
['Transmembrane.\012'
]
C:\BIOPYT~1\UnitTests\UnitTestCase.py assert_equals 72
SwissProtTestCase.py test_keywords 135
expected is ['O59832'] actual is ['']
C:\BIOPYT~1\UnitTests\UnitTestCase.py assert_equals 72
SwissProtTestCase.py test_accessions 89
expected is Homo sapiens (Human). actual is Homo sapiens (Human).


                                                   Cayte


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<DIV><FONT size=3D2>&nbsp; So far, my tests have shown these =
mismatches.&nbsp; I=20
don't understand the third.&nbsp; Is there a non-printing character in =
the=20
text?&nbsp; The file is o59832.sp. I've already posted it to <A=20
href=3D"ftp://bio.perl.org/pub/katel/SwissProt/">ftp://bio.perl.org/pub/k=
atel/SwissProt/</A></FONT></DIV>
<DIV><FONT size=3D2></FONT>&nbsp;</DIV>
<DIV><FONT size=3D2>C:\BIOPYT~1\UnitTests\UnitTestCase.py assert_equals=20
72<BR>SwissProtTestCase.py test_organelle 111<BR>expected is ['Tight =
junction',=20
'Transmembrane.'] actual is=20
['Transmembrane.\012'<BR>]<BR>C:\BIOPYT~1\UnitTests\UnitTestCase.py=20
assert_equals 72<BR>SwissProtTestCase.py test_keywords 135<BR>expected =
is=20
['O59832'] actual is ['']<BR>C:\BIOPYT~1\UnitTests\UnitTestCase.py =
assert_equals=20
72<BR>SwissProtTestCase.py test_accessions 89<BR>expected is Homo =
sapiens=20
(Human). actual is Homo sapiens (Human).</FONT></DIV>
<DIV><FONT size=3D2></FONT>&nbsp;</DIV>
<DIV><FONT size=3D2></FONT>&nbsp;</DIV>
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Cayte<BR></DIV></FONT></BODY></HTML>

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