[BioPython] first cut at rebase

Jeffrey Chang jchang@SMI.Stanford.EDU
Tue, 8 Aug 2000 21:22:21 -0700 (PDT)


It looks like you've got a good start on it!

A couple of quick comments:
- you should be listed as the copyright holder on these files, instead of
me.
- the Bio/Rebase directory needs a __init__.py file to make it a python
package.  Note that Andrew Dalke has warned against having empty
__init__.py filse, because some versions of pkzip may not include them in
an archive.
- don't forget to check in the Tests/output/test_rebase file, after you've
manually verified the output!  :)

Jeff



On Tue, 8 Aug 2000, Cayte wrote:

>   It's not finished, but I checked it in so others could look and suggest
> ideas.  After several attempts to shoehorn Rebase into the line oriented
> approach, suggested in ParserSupport, I tried a streaming approach.  The
> rebase files are short and, for now, I read the whole file into memory, but
> later, I can make the algorithm more sophisticated.  First, I have more data
> fields to add.
> 
>                                                                    Cayte
> 
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