[Biopython-dev] Time for Biopython 1.65?

Travis Wrightsman twrig002 at ucr.edu
Tue Nov 18 01:39:07 UTC 2014


I'll proof read the generated API docs for formatting and spelling but I
can't critique any code since I'm not familiar with biopython's modules and
how they all work yet.

On Mon, Nov 17, 2014 at 4:20 PM, Evan Parker <eparker05 at gmail.com> wrote:

> The lazy-load-pull branch has been rebased on the current master and is
> passing tests. It was previously failing tests due to the issue with the
> MySQL connector.
>
> On Mon Nov 17 2014 at 8:32:24 AM Peter Cock <p.j.a.cock at googlemail.com>
> wrote:
>
>> Hi all,
>>
>> Compared to our typical release cycle, we're a bit overdue
>> for releasing Biopython 1.65.
>>
>> Thanks to the NBDC/DBCLS BioHackathon 2014, I was
>> able to spend most of last week working on the Biopython
>> pull request and issues backlog - so things are looking much
>> better now.
>>
>> Things I think we need to fix first:
>>
>>  * PhyloXML output under Python 3
>>     https://github.com/biopython/biopython/issues/368
>>
>> Things I would like to have:
>>
>>  * Evan's lazy loading as an experimental feature
>>    https://github.com/biopython/biopython/pull/356
>>
>>  * Proof reading of epydoc's reStructuredText API docs
>>    (which should now be much prettier than our last release)
>>
>> Things worth wider discussion (and maybe a beta release):
>>
>>  * String-like equality for Seq objects
>>    https://github.com/biopython/biopython/pull/359
>>
>> Feedback on these or patches on other issues most
>> welcome. Is there anything else I've overlooked which
>> justifies delaying a release?
>>
>> Tiago kindly did the last couple of releases, but unless
>> we have another volunteer I am willing to do this one.
>>
>> Thanks,
>>
>> Peter
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>>
>
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