[Biopython-dev] MySQL (BioSQL)

Tiago Antao tra at popgen.net
Sun May 25 12:42:10 UTC 2014


Hi Peter,

Thanks for reviewing this. It is cool that we now support BioSQL on
Python 3 with all the standard databases.

On Fri, 2 May 2014 12:16:48 +0100
Tiago Antao <tra at popgen.net> wrote:

> On Wed, 30 Apr 2014 11:38:29 +0100
> Peter Cock <p.j.a.cock at googlemail.com> wrote:
> 
> > Since mysqldb isn't being actively maintained, that seems like
> > a good plan - thanks :)
> 
> 
> I have a pull request on this (did not commit it directly because I do
> not trust myself on this).
> 
> There are two main issues:
> 
> 1. I have changed the test schema for mysql (removed the BINARY from
> VARCHAR BINARY). Does this make sense?
> 
> 2. Should we remove mysqldb completely (and use mysql.connector
> instead)?
> 
> Comments appreciated as I am not a specialist on this...
> 
> Tiago
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