[Biopython-dev] A biopython buildbot as a docker container

Tiago Antao tra at popgen.net
Tue Mar 18 14:26:10 EDT 2014


An update on the status:

1. A couple of problems with fasttree and dialign2. These seem
genuine problems with the test code/modules.

2. Prank will wait for ubuntu trusty (it will be a standard package). I
will then include it.

3. I was just able to find part of the fonts for the graphics packages,
so a couple of tests are being skipped

4. naccess as a very restrictive activation system, impossible to add.

1 and 3 are solvable (2 will sort itself out with time). 1 is really a
problem with the biopython code, I think. For 3, if someone could have
a look at the existing fonts here:
https://github.com/tiagoantao/my-containers/blob/master/biopython/Biopython-Basic
And tell me which ones are missing, I would take care of adding them.

Tiago
PS - In the near future I will do a Python 3 container also.


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