[Biopython-dev] fastsimcoal

Melissa Gymrek mgymrek at mit.edu
Wed Feb 19 23:05:07 UTC 2014


Hello,

I am new to the list and don't know the status of the PopGen tools, so
forgive me if this has already been discussed. I added a controller for
fastsimcoal to the SimCoal module (the commit from my forked repository,
with the new controller plus a test case is
here<https://github.com/mgymrek/biopython/commit/c9e066de7a22c12cb2e4af846f4799be90f8892c#diff-e6f6a9a7aaff77a7c7d3cf4a61defaef>).
Fastsimcoal is basically a faster and more flexible version of simcoal2 and
shares the same input format generated by Bio.PopGen.SimCoal.Template, so
it made sense to add it there. Would there be any interest in adding this?

Best,
~Meliss



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