[Biopython-dev] Pickle problem on 64 bit Windows with Python 3.4

Manlio Calvi manlio.calvi at gmail.com
Tue Apr 22 11:09:31 UTC 2014


On Tue, Apr 22, 2014 at 12:44 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Mon, Apr 21, 2014 at 6:45 PM, Manlio Calvi <manlio.calvi at gmail.com> wrote:
>> From what I read here http://hg.python.org/cpython/rev/4a6b8f86b081 could be
>> a problem related to that file. Seems to me they stripped the check for a
>> quote that must be in, and looking at the pickle apparently isn't
>>
>
> OK, now things are more confusing - this seems to be working on
> a colleague's machine, so it may be something different on your
> setup. Are you using a self compiled Python 3.4?
>
> We installed the 64 bit version Python 3.4 on Windows 7 using the
> binary installed from the website (Windows x86-64 MSI installer),
> selecting for all users (which probably requires admin rights):
> https://www.python.org/ftp/python/3.4.0/python-3.4.0.amd64.msi

Exactly as I did, I installed the dependencies (numpy and the like)
for Biopython using Gohlke's ones.

> We manually downloaded the pickle file via the raw link on GitHub,
> and tried the test code (as shown below), and it worked perfectly.

I've used the standard "git pull" command from the repository.
Moreover I'm coming from a recent format and reinstall of windows in
this machine.
I'm a bit lost here...



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