[Biopython-dev] Fwd: [biopython] Custom GenBank locus length (#171)

[Peter Cock]

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---------- Forwarded message ----------
From: Marco Galardini <notifications at github.com>
Date: Thu, Mar 28, 2013 at 3:19 PM
Subject: [biopython] Custom GenBank locus length (#171)
To: biopython/biopython <biopython at noreply.github.com>


Instead of an exception, raise a warning, so the file is saved and the
user can decide to correct the error.

I don't know if this is a good pratice, but I have some GenBank files
provided by the JGI/DOE with locus names longer than 16 chars, so I
guess that providing a warning to the user instead of a complete
failure could be better.

________________________________

You can merge this Pull Request by running

  git pull https://github.com/mgalardini/biopython patch-1

Or view, comment on, or merge it at:

  https://github.com/biopython/biopython/pull/171

Commit Summary

Custom GenBank locus length

File Changes

M Bio/SeqIO/InsdcIO.py (4)

Patch Links:

https://github.com/biopython/biopython/pull/171.patch
https://github.com/biopython/biopython/pull/171.diff