[Biopython-dev] Questions about Codon Alignment Proposal

[Peter Cock]

On Sun, Apr 28, 2013 at 2:06 PM, Saket Choudhary <saketkc at gmail.com> wrote:
> Hi Peter and Eric,
>
> So do we also implement the alignment algorithm as well ?
> or do we use clustalw or any other alignment software ?
>
> Thanks
> Saket

Hi Saket,

Currently Biopython has no build in MSA algorithms, but has instead
called out to tools like ClustalW or MUSCLE. BioPerl does the same.
BioJava however does try to include this sort of thing.

Peter