[Biopython-dev] [Bug 3166] Bio.PDB.DSSP fails to work on PDBs with HETATM

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3166





------- Comment #12 from macrozhu+biopy at gmail.com  2011-01-20 10:57 EST -------
(In reply to comment #11)
> (In reply to comment #10)
> Cheers. Have you been able to test this patch, and does it satisfy?
> 
I made changes to two lines because:
 -- input to function res2code() should be instances of Bio.PDB.Residue, not
strings;
 -- variable res is from last loop round, thus not suitable as input to
res2code(). 
So in the end, I changed two of the lines that use function res2code(). It has
been tested on around 20,000 PDBs.

cheers,

221c221
<                 res_seq_icode = '%s%s' % (res_id[1],res_id[2])
---
>                 res_seq_icode = res2code(res_id)
266c266
<                     res_seq_icode = '%s%s' % (res_id[1],res_id[2])
---
>                     res_seq_icode = res2code(res_id)


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